Variant report

Variant	rs2662706
Chromosome Location	chr4:121190590-121190591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121189633..121192348-chr4:121208319..121209845,2	K562	blood:
2	chr4:121185242..121187871-chr4:121188856..121190633,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1355112	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1355114	0.86[ASN][1000 genomes]
rs1396534	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396536	0.90[ASN][1000 genomes]
rs1508999	0.90[ASN][1000 genomes]
rs2036694	0.90[ASN][1000 genomes]
rs2036695	0.80[ASN][1000 genomes]
rs2036696	0.80[ASN][1000 genomes]
rs2662704	0.84[ASN][1000 genomes]
rs2662708	0.83[ASN][1000 genomes]
rs2662709	0.84[ASN][1000 genomes]
rs2662723	0.84[ASN][1000 genomes]
rs2662724	0.85[ASN][1000 genomes]
rs2662730	0.90[ASN][1000 genomes]
rs2662731	0.80[ASN][1000 genomes]
rs2662732	0.90[ASN][1000 genomes]
rs2662741	0.80[ASN][1000 genomes]
rs2662742	0.90[ASN][1000 genomes]
rs2662743	0.80[ASN][1000 genomes]
rs2662760	0.82[ASN][1000 genomes]
rs2693757	0.87[ASN][1000 genomes]
rs2693760	0.85[CHB][hapmap]
rs2715957	0.82[ASN][1000 genomes]
rs2715966	0.80[ASN][1000 genomes]
rs2715967	0.90[ASN][1000 genomes]
rs2715968	0.80[ASN][1000 genomes]
rs2715978	0.84[ASN][1000 genomes]
rs2715992	0.85[CHB][hapmap]
rs2715999	0.95[ASN][1000 genomes]
rs2716008	0.99[ASN][1000 genomes]
rs2716009	0.84[ASN][1000 genomes]
rs2716010	0.82[ASN][1000 genomes]
rs906716	0.82[ASN][1000 genomes]
rs955002	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1002606	chr4:121145456-121194713	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121189800-121198000	Weak transcription	Fetal Lung	lung

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