Variant report

Variant	rs906716
Chromosome Location	chr4:121249478-121249479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1355112	0.81[ASN][1000 genomes]
rs1396534	0.82[ASN][1000 genomes]
rs1396536	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1508999	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1554728	0.94[ASN][1000 genomes]
rs1554729	0.94[ASN][1000 genomes]
rs2036693	0.94[ASN][1000 genomes]
rs2036694	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2036695	0.80[ASN][1000 genomes]
rs2036696	0.80[ASN][1000 genomes]
rs2662695	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2662697	0.94[ASN][1000 genomes]
rs2662698	0.94[ASN][1000 genomes]
rs2662699	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2662700	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2662706	0.82[ASN][1000 genomes]
rs2662715	0.82[ASN][1000 genomes]
rs2662720	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2662721	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2662723	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2662724	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2662730	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2662731	0.80[ASN][1000 genomes]
rs2662732	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2662741	0.80[ASN][1000 genomes]
rs2662742	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2662743	0.80[ASN][1000 genomes]
rs2693755	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2693756	0.82[ASN][1000 genomes]
rs2693757	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2693758	0.82[ASN][1000 genomes]
rs2693760	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2693763	0.94[ASN][1000 genomes]
rs2693765	0.81[ASN][1000 genomes]
rs2715951	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2715952	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2715953	0.82[EUR][1000 genomes]
rs2715958	0.82[ASN][1000 genomes]
rs2715959	0.82[ASN][1000 genomes]
rs2715960	0.82[ASN][1000 genomes]
rs2715965	0.81[ASN][1000 genomes]
rs2715966	0.80[ASN][1000 genomes]
rs2715967	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2715968	0.80[ASN][1000 genomes]
rs2715992	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2715993	0.94[ASN][1000 genomes]
rs2716008	0.82[ASN][1000 genomes]
rs955002	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121240400-121252400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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