Variant report

Variant	rs1358901
Chromosome Location	chr6:165385101-165385102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1467567	1.00[AMR][1000 genomes]
rs1923379	1.00[AMR][1000 genomes]
rs227481	1.00[AMR][1000 genomes]
rs227483	1.00[AMR][1000 genomes]
rs227485	1.00[AMR][1000 genomes]
rs3857510	1.00[AMR][1000 genomes]
rs4709916	1.00[AMR][1000 genomes]
rs6455985	1.00[AMR][1000 genomes]
rs6919502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs911724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9459252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs975008	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165384400-165385200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:165384400-165385400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:165384600-165385200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:165384600-165385200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:165385000-165385200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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