Variant report

Variant	rs975008
Chromosome Location	chr6:165423455-165423456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1358901	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1467567	1.00[AMR][1000 genomes]
rs1923379	1.00[AMR][1000 genomes]
rs227481	1.00[AMR][1000 genomes]
rs227483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs227485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857510	1.00[AMR][1000 genomes]
rs4709916	1.00[AMR][1000 genomes]
rs6455985	1.00[AMR][1000 genomes]
rs6919502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs911724	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9459252	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165420400-165424200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:165422200-165425600	Enhancers	HSMM	muscle
3	chr6:165422400-165425800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:165422800-165426800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:165423200-165425400	Enhancers	Fetal Heart	heart
6	chr6:165423400-165424000	Enhancers	HSMMtube	muscle
7	chr6:165423400-165425400	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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