Variant report

Variant	rs911724
Chromosome Location	chr6:165341964-165341965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QKI-5	chr6:165341827-165342411	XLOC_005534
2	lnc-QKI-5	chr6:165341827-165342092	NONHSAT115997

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1358901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1467567	1.00[AMR][1000 genomes]
rs1923379	1.00[AMR][1000 genomes]
rs227481	1.00[AMR][1000 genomes]
rs227483	1.00[AMR][1000 genomes]
rs227485	1.00[AMR][1000 genomes]
rs3857510	1.00[AMR][1000 genomes]
rs4709916	1.00[AMR][1000 genomes]
rs6455985	1.00[AMR][1000 genomes]
rs6919502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9459252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs975008	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165339600-165342800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:165339800-165342000	Weak transcription	Gastric	stomach
4	chr6:165340800-165344000	Active TSS	Brain Anterior Caudate	brain
5	chr6:165341000-165342000	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:165341000-165342200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:165341200-165342000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:165341200-165342000	Active TSS	Fetal Brain Male	brain
9	chr6:165341200-165342000	Active TSS	Psoas Muscle	Psoas
10	chr6:165341200-165342000	Active TSS	Osteobl	bone
11	chr6:165341200-165342200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr6:165341200-165342200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:165341200-165342200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:165341200-165342200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:165341200-165342200	Flanking Active TSS	HSMM	muscle
16	chr6:165341200-165342200	Active TSS	NH-A	brain
17	chr6:165341200-165342600	Active TSS	Brain Germinal Matrix	brain
18	chr6:165341200-165342600	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:165341200-165342800	Active TSS	Brain Angular Gyrus	brain
20	chr6:165341200-165342800	Active TSS	Brain Hippocampus Middle	brain
21	chr6:165341200-165343000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:165341200-165343200	Active TSS	Fetal Brain Female	brain
23	chr6:165341400-165342000	Active TSS	Stomach Smooth Muscle	stomach
24	chr6:165341600-165343200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:165341600-165343200	Active TSS	Brain Substantia Nigra	brain
26	chr6:165341800-165342000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:165341800-165342200	Flanking Active TSS	Fetal Muscle Trunk	muscle
28	chr6:165341800-165342200	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr6:165341800-165342200	Enhancers	HSMMtube	muscle
30	chr6:165341800-165342400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr6:165341800-165343400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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