Variant report

Variant	rs1359760
Chromosome Location	chr1:184173668-184173669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1006198	0.82[ASN][1000 genomes]
rs10797942	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10797946	0.84[ASN][1000 genomes]
rs10911524	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911525	0.89[ASN][1000 genomes]
rs10911526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911527	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911530	0.84[ASN][1000 genomes]
rs10911531	0.84[ASN][1000 genomes]
rs10911555	0.89[CHB][hapmap]
rs12033327	0.87[ASN][1000 genomes]
rs12128572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136077	0.86[ASN][1000 genomes]
rs12139463	0.84[ASN][1000 genomes]
rs12139516	0.86[ASN][1000 genomes]
rs1327139	0.87[ASN][1000 genomes]
rs1327143	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1327147	0.84[ASN][1000 genomes]
rs1409809	0.87[ASN][1000 genomes]
rs1831055	0.87[ASN][1000 genomes]
rs1831056	0.87[ASN][1000 genomes]
rs1854086	0.86[ASN][1000 genomes]
rs1863155	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863156	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863157	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019376	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081401	0.82[ASN][1000 genomes]
rs2081402	0.82[ASN][1000 genomes]
rs2081403	0.82[ASN][1000 genomes]
rs2151172	0.85[ASN][1000 genomes]
rs2161988	0.85[ASN][1000 genomes]
rs2194698	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194699	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378819	0.92[ASN][1000 genomes]
rs2378824	0.86[ASN][1000 genomes]
rs2378825	0.87[ASN][1000 genomes]
rs2840274	0.83[ASN][1000 genomes]
rs3954285	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4428848	0.85[CHB][hapmap]
rs4650656	0.92[ASN][1000 genomes]
rs4650663	0.86[ASN][1000 genomes]
rs4651182	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651186	0.84[ASN][1000 genomes]
rs4651189	0.84[ASN][1000 genomes]
rs4651190	0.84[ASN][1000 genomes]
rs4651191	0.81[ASN][1000 genomes]
rs4651193	0.83[ASN][1000 genomes]
rs4651200	0.85[CHB][hapmap]
rs56308906	0.82[ASN][1000 genomes]
rs6424931	0.92[ASN][1000 genomes]
rs6424933	0.91[ASN][1000 genomes]
rs6424934	0.91[ASN][1000 genomes]
rs6676366	0.82[ASN][1000 genomes]
rs6678460	0.83[ASN][1000 genomes]
rs6689088	0.82[ASN][1000 genomes]
rs714625	0.82[ASN][1000 genomes]
rs7349135	0.92[ASN][1000 genomes]
rs7530243	0.80[CHB][hapmap]
rs7540770	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7549600	0.82[ASN][1000 genomes]
rs929941	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932993	0.89[CHB][hapmap]
rs963234	0.85[CHB][hapmap]
rs9787399	0.89[CHB][hapmap]
rs9803635	0.82[ASN][1000 genomes]
rs9803849	0.82[ASN][1000 genomes]
rs9803931	0.82[ASN][1000 genomes]
rs9804048	0.82[ASN][1000 genomes]
rs993065	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184171600-184179000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:184171600-184179200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:184172800-184173800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:184172800-184173800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:184172800-184173800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:184172800-184173800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:184172800-184174000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:184173000-184173800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:184173000-184174800	Weak transcription	Fetal Heart	heart
12	chr1:184173200-184173800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:184173400-184173800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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