Variant report
| Variant | rs2378819 |
|---|---|
| Chromosome Location | chr1:184149099-184149100 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10911524 | 0.92[ASN][1000 genomes] |
| rs10911525 | 0.81[ASN][1000 genomes] |
| rs10911526 | 0.92[ASN][1000 genomes] |
| rs10911527 | 0.92[ASN][1000 genomes] |
| rs12128572 | 0.92[ASN][1000 genomes] |
| rs1327139 | 0.81[ASN][1000 genomes] |
| rs1327143 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1359760 | 0.92[ASN][1000 genomes] |
| rs1409809 | 0.81[ASN][1000 genomes] |
| rs1831055 | 0.81[ASN][1000 genomes] |
| rs1831056 | 0.81[ASN][1000 genomes] |
| rs1854086 | 0.80[ASN][1000 genomes] |
| rs1863155 | 0.92[ASN][1000 genomes] |
| rs1863156 | 0.92[ASN][1000 genomes] |
| rs1863157 | 0.92[ASN][1000 genomes] |
| rs2019376 | 0.89[ASN][1000 genomes] |
| rs2194698 | 0.92[ASN][1000 genomes] |
| rs2378825 | 0.81[ASN][1000 genomes] |
| rs3954285 | 0.92[ASN][1000 genomes] |
| rs4650656 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4651182 | 0.92[ASN][1000 genomes] |
| rs6424931 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6424933 | 0.84[ASN][1000 genomes] |
| rs6424934 | 0.84[ASN][1000 genomes] |
| rs7349135 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7540770 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs929941 | 0.92[ASN][1000 genomes] |
| rs993065 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530079 | chr1:183797938-184639971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006655 | chr1:183922288-184186677 | Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv818622 | chr1:184144995-184158796 | Weak transcription Bivalent Enhancer Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:184148800-184149400 | Enhancers | Liver | Liver |
