Variant report

Variant	rs1863155
Chromosome Location	chr1:184177245-184177246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184175834..184177467-chr1:184179688..184182086,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1006198	0.82[ASN][1000 genomes]
rs10797942	0.84[ASN][1000 genomes]
rs10797946	0.84[ASN][1000 genomes]
rs10911524	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911525	0.89[ASN][1000 genomes]
rs10911526	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911527	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911530	0.84[ASN][1000 genomes]
rs10911531	0.84[ASN][1000 genomes]
rs10911555	0.87[CHB][hapmap]
rs12033327	0.87[ASN][1000 genomes]
rs12128572	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136077	0.86[ASN][1000 genomes]
rs12139463	0.84[ASN][1000 genomes]
rs12139516	0.86[ASN][1000 genomes]
rs1327139	0.87[ASN][1000 genomes]
rs1327143	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1327147	0.84[ASN][1000 genomes]
rs1359760	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409809	0.87[ASN][1000 genomes]
rs1831055	0.87[ASN][1000 genomes]
rs1831056	0.87[ASN][1000 genomes]
rs1854086	0.86[ASN][1000 genomes]
rs1863156	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863157	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019376	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081401	0.82[ASN][1000 genomes]
rs2081402	0.82[ASN][1000 genomes]
rs2081403	0.82[ASN][1000 genomes]
rs2151172	0.85[ASN][1000 genomes]
rs2161988	0.85[ASN][1000 genomes]
rs2194698	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194699	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378819	0.92[ASN][1000 genomes]
rs2378824	0.86[ASN][1000 genomes]
rs2378825	0.87[ASN][1000 genomes]
rs2840274	0.83[ASN][1000 genomes]
rs3954285	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4428848	0.87[CHB][hapmap]
rs4650656	0.92[ASN][1000 genomes]
rs4650663	0.86[ASN][1000 genomes]
rs4651182	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651186	0.84[ASN][1000 genomes]
rs4651189	0.84[ASN][1000 genomes]
rs4651190	0.84[ASN][1000 genomes]
rs4651191	0.81[ASN][1000 genomes]
rs4651193	0.83[ASN][1000 genomes]
rs4651200	0.87[CHB][hapmap]
rs56308906	0.82[ASN][1000 genomes]
rs6424931	0.92[ASN][1000 genomes]
rs6424933	0.91[ASN][1000 genomes]
rs6424934	0.91[ASN][1000 genomes]
rs6676366	0.82[ASN][1000 genomes]
rs6678460	0.83[ASN][1000 genomes]
rs6689088	0.82[ASN][1000 genomes]
rs714625	0.82[ASN][1000 genomes]
rs7349135	0.92[ASN][1000 genomes]
rs7540770	0.87[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7549600	0.82[ASN][1000 genomes]
rs929941	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932993	0.82[CHB][hapmap]
rs963234	0.87[CHB][hapmap]
rs9787399	0.87[CHB][hapmap]
rs9803635	0.82[ASN][1000 genomes]
rs9803849	0.82[ASN][1000 genomes]
rs9803931	0.82[ASN][1000 genomes]
rs9804048	0.82[ASN][1000 genomes]
rs993065	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1863155	CHST12	trans	parietal	SCAN
rs1863155	RGS16	cis	parietal	SCAN
rs1863155	TEDDM1	cis	parietal	SCAN
rs1863155	RALGPS2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184171600-184179000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:184171600-184179200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:184176400-184178200	Weak transcription	Fetal Heart	heart
6	chr1:184176400-184179000	Weak transcription	Left Ventricle	heart
7	chr1:184176400-184179000	Weak transcription	Right Atrium	heart

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