Variant report

Variant	rs1360150
Chromosome Location	chr1:57367617-57367618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57361785..57363562-chr1:57365977..57368137,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1342440	1.00[CEU][hapmap]
rs1612309	1.00[CEU][hapmap]
rs1616673	1.00[CEU][hapmap]
rs1620075	1.00[CEU][hapmap]
rs17114516	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17114527	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs17114531	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114533	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114537	0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17114539	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17114544	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17114548	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114585	1.00[CEU][hapmap]
rs17114605	1.00[CEU][hapmap]
rs1741986	1.00[CEU][hapmap]
rs1741988	1.00[CEU][hapmap]
rs1754538	1.00[CEU][hapmap]
rs1774889	1.00[CEU][hapmap]
rs1774895	1.00[CEU][hapmap]
rs1774896	1.00[CEU][hapmap]
rs1774897	1.00[CEU][hapmap]
rs59755908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7417478	1.00[ASN][1000 genomes]
rs7547015	1.00[ASN][1000 genomes]
rs9437011	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57362400-57369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:57364200-57375600	Weak transcription	Pancreas	Pancrea
3	chr1:57364600-57370400	Weak transcription	Gastric	stomach
4	chr1:57364600-57376200	Weak transcription	Stomach Mucosa	stomach
5	chr1:57366400-57368000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:57366600-57368800	Enhancers	Fetal Intestine Small	intestine
7	chr1:57366800-57368200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:57367000-57368000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:57367000-57368000	Enhancers	NHDF-Ad	bronchial
10	chr1:57367200-57368000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:57367200-57368000	Enhancers	HepG2	liver
12	chr1:57367200-57378400	Enhancers	Liver	Liver
13	chr1:57367400-57368000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:57367600-57368000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:57367600-57368000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:57367600-57368000	Weak transcription	Fetal Intestine Large	intestine
17	chr1:57367600-57368000	Enhancers	Hela-S3	cervix
18	chr1:57367600-57368000	Enhancers	NHLF	lung

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