Variant report

Variant	rs17114533
Chromosome Location	chr1:57363494-57363495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1360150	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114516	1.00[ASN][1000 genomes]
rs17114527	0.96[AFR][1000 genomes]
rs17114531	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114537	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17114539	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17114544	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17114548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59755908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7417478	1.00[ASN][1000 genomes]
rs7547015	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57360400-57364400	Enhancers	Liver	Liver
2	chr1:57361400-57364200	Enhancers	Pancreas	Pancrea
3	chr1:57362000-57363800	Enhancers	Fetal Intestine Large	intestine
4	chr1:57362000-57364600	Enhancers	Gastric	stomach
5	chr1:57362200-57365800	Enhancers	HepG2	liver
6	chr1:57362400-57363800	Weak transcription	Stomach Mucosa	stomach
7	chr1:57362400-57364000	Enhancers	Lung	lung
8	chr1:57362400-57364200	Enhancers	Fetal Intestine Small	intestine
9	chr1:57362400-57369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:57362800-57363800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:57363000-57363800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:57363000-57363800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:57363000-57364000	Enhancers	Right Atrium	heart
14	chr1:57363000-57364000	Enhancers	NHDF-Ad	bronchial
15	chr1:57363000-57364400	Enhancers	Left Ventricle	heart
16	chr1:57363200-57363800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr1:57363200-57364200	Enhancers	Duodenum Mucosa	Duodenum
18	chr1:57363400-57363800	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links