Variant report

Variant	rs1362383
Chromosome Location	chr16:52225830-52225831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:52225165..52225998-chr16:53056108..53056853,2	K562	blood:
2	chr16:52225285..52225970-chr16:52895207..52896160,2	MCF-7	breast:
3	chr16:52225598..52226132-chr16:52946181..52946968,2	K562	blood:
4	chr16:52101791..52102576-chr16:52225119..52226029,2	MCF-7	breast:
5	chr16:52225491..52226074-chr16:52946202..52947099,3	MCF-7	breast:
6	chr16:52225163..52225916-chr16:52946199..52946919,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10521259	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10521260	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1211507	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1211854	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12149054	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12446673	0.85[AMR][1000 genomes]
rs12919975	0.82[AMR][1000 genomes]
rs12921555	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12921894	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12931674	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362384	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1362385	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1362386	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1362387	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1420203	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1420204	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1420205	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1420206	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1641352	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1641364	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269910	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17353227	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17354016	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17354393	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1894878	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2160274	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192847	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192848	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216052	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2256155	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540690	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540691	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540692	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540746	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2540747	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540748	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3095532	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095533	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095553	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095561	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34483935	0.80[AMR][1000 genomes]
rs34646478	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34936164	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35639867	0.80[AMR][1000 genomes]
rs35650351	0.82[AMR][1000 genomes]
rs4785133	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5010123	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7184216	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7188574	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7189025	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7189391	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7194603	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7200614	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201536	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7201636	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7202128	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7202303	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7205520	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7206102	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7206335	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7206623	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8058391	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9646281	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1808	chr16:52214779-52247196	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv522374	chr16:52219942-52228745	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52225600-52226200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:52225600-52226400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr16:52225600-52226600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:52225600-52226600	Weak transcription	Liver	Liver
5	chr16:52225800-52226200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr16:52225800-52226200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:52225800-52226200	Enhancers	Stomach Mucosa	stomach
8	chr16:52225800-52226400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr16:52225800-52226600	Enhancers	HUES64 Cell Line	embryonic stem cell

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