Variant report

Variant	rs3095553
Chromosome Location	chr16:52237030-52237031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10521259	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10521260	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11649692	0.85[CEU][hapmap]
rs1211507	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1211854	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12149054	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12446673	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12919975	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12920812	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12921555	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12921894	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12931674	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362383	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362384	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1362385	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1362386	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1362387	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1420203	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1420204	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1420205	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1420206	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1641352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1641364	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17353227	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17354016	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17354393	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1894878	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2160274	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192847	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192848	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216052	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2256155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540690	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540691	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540692	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540746	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2540747	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540748	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3095532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095533	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095561	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34483935	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34646478	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34936164	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35639867	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35650351	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4785133	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5007517	0.87[EUR][1000 genomes]
rs5010123	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7184216	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7188574	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7189025	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7189391	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7194603	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7200614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201536	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7201636	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7202128	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7202303	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7205520	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7206102	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7206335	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7206623	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8058391	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9646281	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1808	chr16:52214779-52247196	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52236400-52237200	Enhancers	NHEK	skin
2	chr16:52236400-52237800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:52236400-52238600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links