Variant report

Variant	rs1365773
Chromosome Location	chr2:231009554-231009555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231007633..231009577-chr2:231010416..231014547,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10199897	1.00[ASN][1000 genomes]
rs10209232	1.00[ASN][1000 genomes]
rs10498243	0.85[ASN][1000 genomes]
rs10755047	0.91[ASN][1000 genomes]
rs10804362	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10804363	0.80[AMR][1000 genomes]
rs10933323	0.85[ASN][1000 genomes]
rs10933324	0.85[ASN][1000 genomes]
rs10933326	1.00[ASN][1000 genomes]
rs11676757	0.91[ASN][1000 genomes]
rs11894286	0.85[ASN][1000 genomes]
rs12694841	0.85[ASN][1000 genomes]
rs12694843	0.93[ASN][1000 genomes]
rs13004807	1.00[ASN][1000 genomes]
rs1365774	1.00[ASN][1000 genomes]
rs1365775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1427291	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529377	0.85[ASN][1000 genomes]
rs1549567	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs1549568	1.00[ASN][1000 genomes]
rs1549569	1.00[ASN][1000 genomes]
rs1549570	1.00[ASN][1000 genomes]
rs1549571	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863673	0.85[ASN][1000 genomes]
rs2396712	1.00[ASN][1000 genomes]
rs2894694	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4361119	0.85[ASN][1000 genomes]
rs4973276	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4973277	0.93[ASN][1000 genomes]
rs6436909	0.85[ASN][1000 genomes]
rs6436912	1.00[ASN][1000 genomes]
rs6436913	0.89[ASN][1000 genomes]
rs6706782	0.85[ASN][1000 genomes]
rs6707129	0.82[ASN][1000 genomes]
rs6710756	0.82[AMR][1000 genomes]
rs6721137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6735404	0.85[ASN][1000 genomes]
rs6735555	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6754313	0.85[ASN][1000 genomes]
rs6754451	0.85[ASN][1000 genomes]
rs7424288	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9807953	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007920	chr2:230775427-231065592	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1001562	chr2:230862717-231187043	Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv536156	chr2:230862717-231187043	Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv498047	chr2:230951712-231250489	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv875943	chr2:230960946-231027162	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1365773	INPP5D	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231007400-231010400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links