Variant report

Variant	rs1863673
Chromosome Location	chr2:231022706-231022707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:231018019..231019836-chr2:231022699..231024449,2	MCF-7	breast:
2	chr2:231020225..231023004-chr2:231144034..231146526,2	K562	blood:
3	chr2:231018752..231022838-chr2:231023461..231026351,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10199897	0.85[ASN][1000 genomes]
rs10209232	0.85[ASN][1000 genomes]
rs10755047	0.93[ASN][1000 genomes]
rs10933326	0.85[ASN][1000 genomes]
rs11676757	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12694843	0.91[ASN][1000 genomes]
rs13004807	0.85[ASN][1000 genomes]
rs1365773	0.85[ASN][1000 genomes]
rs1365774	0.85[ASN][1000 genomes]
rs1365775	0.85[ASN][1000 genomes]
rs1427291	0.85[ASN][1000 genomes]
rs1549567	0.85[ASN][1000 genomes]
rs1549568	0.85[ASN][1000 genomes]
rs1549569	0.85[ASN][1000 genomes]
rs1549570	0.85[ASN][1000 genomes]
rs1549571	0.85[ASN][1000 genomes]
rs2396712	0.85[ASN][1000 genomes]
rs2894694	0.87[ASN][1000 genomes]
rs4973277	0.91[ASN][1000 genomes]
rs6436912	0.85[ASN][1000 genomes]
rs6436913	0.87[ASN][1000 genomes]
rs6721137	0.85[ASN][1000 genomes]
rs9807953	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007920	chr2:230775427-231065592	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1001562	chr2:230862717-231187043	Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv536156	chr2:230862717-231187043	Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv498047	chr2:230951712-231250489	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv875943	chr2:230960946-231027162	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv518470	chr2:231018169-231027162	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231018200-231026000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:231019200-231022800	Enhancers	Primary hematopoietic stem cells	blood
3	chr2:231019400-231024600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:231020600-231028400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:231021600-231022800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:231022400-231022800	Weak transcription	GM12878-XiMat	blood
7	chr2:231022400-231024800	Weak transcription	Spleen	Spleen
8	chr2:231022400-231029200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:231022600-231023200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:231022600-231024600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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