Variant report

Variant	rs1368742
Chromosome Location	chr3:85442208-85442209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10433499	0.82[EUR][1000 genomes]
rs10433525	0.82[EUR][1000 genomes]
rs10511075	0.84[EUR][1000 genomes]
rs10511083	0.85[EUR][1000 genomes]
rs10511085	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10511087	0.88[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127893	0.85[EUR][1000 genomes]
rs11127897	0.82[EUR][1000 genomes]
rs1155666	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11917490	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11921010	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12491020	0.80[ASN][1000 genomes]
rs12493423	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12498010	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12633910	0.86[CHB][hapmap]
rs12637791	0.85[EUR][1000 genomes]
rs12637798	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12638482	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12638798	0.82[EUR][1000 genomes]
rs12714625	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1368737	0.88[JPT][hapmap]
rs1368743	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1368750	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1375560	0.85[EUR][1000 genomes]
rs1433708	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433711	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1433714	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1449391	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1470635	0.85[EUR][1000 genomes]
rs1470636	0.85[EUR][1000 genomes]
rs1542248	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1549979	1.00[YRI][hapmap]
rs1551043	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1551044	0.83[EUR][1000 genomes]
rs17456263	0.85[EUR][1000 genomes]
rs17457050	0.84[EUR][1000 genomes]
rs17457189	0.82[EUR][1000 genomes]
rs17457217	0.81[EUR][1000 genomes]
rs17457377	0.82[EUR][1000 genomes]
rs17457426	0.82[EUR][1000 genomes]
rs17457454	0.82[EUR][1000 genomes]
rs17515196	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17515586	0.85[EUR][1000 genomes]
rs17516470	0.84[EUR][1000 genomes]
rs17516504	0.84[EUR][1000 genomes]
rs17516546	0.83[EUR][1000 genomes]
rs17516580	0.83[EUR][1000 genomes]
rs17516683	0.83[EUR][1000 genomes]
rs17516857	0.82[EUR][1000 genomes]
rs17517080	0.82[EUR][1000 genomes]
rs1813696	0.85[EUR][1000 genomes]
rs1821349	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1865250	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1991872	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2069123	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2077839	0.85[EUR][1000 genomes]
rs2082556	1.00[YRI][hapmap]
rs2117152	0.83[ASN][1000 genomes]
rs2117153	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2122235	0.82[EUR][1000 genomes]
rs2163971	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2163972	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2167046	0.82[EUR][1000 genomes]
rs2167047	0.82[EUR][1000 genomes]
rs28732378	0.81[ASN][1000 genomes]
rs2875907	0.86[EUR][1000 genomes]
rs34305569	0.84[EUR][1000 genomes]
rs35438712	0.81[EUR][1000 genomes]
rs35701422	0.84[EUR][1000 genomes]
rs35738543	0.85[EUR][1000 genomes]
rs35827242	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4279114	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4637303	0.82[EUR][1000 genomes]
rs4856269	0.83[ASN][1000 genomes]
rs4856271	0.82[EUR][1000 genomes]
rs4856571	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4856573	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55801641	0.83[EUR][1000 genomes]
rs56779213	0.84[EUR][1000 genomes]
rs56816351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57630146	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57756567	0.84[EUR][1000 genomes]
rs58828944	0.85[EUR][1000 genomes]
rs58919842	0.84[EUR][1000 genomes]
rs59225869	0.85[EUR][1000 genomes]
rs59491876	0.84[EUR][1000 genomes]
rs59770976	0.84[EUR][1000 genomes]
rs59825726	0.85[EUR][1000 genomes]
rs59967234	0.85[EUR][1000 genomes]
rs60311538	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61586601	0.82[EUR][1000 genomes]
rs62250661	0.88[AFR][1000 genomes]
rs62250685	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62250711	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62250712	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62250713	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62250714	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62250715	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62250719	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62250750	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62250754	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62250758	0.84[EUR][1000 genomes]
rs62252462	0.85[EUR][1000 genomes]
rs62252463	0.85[EUR][1000 genomes]
rs62252464	0.84[EUR][1000 genomes]
rs62252465	0.84[EUR][1000 genomes]
rs62252466	0.85[EUR][1000 genomes]
rs62252467	0.84[EUR][1000 genomes]
rs62252512	0.84[EUR][1000 genomes]
rs62252513	0.82[EUR][1000 genomes]
rs62252516	0.82[EUR][1000 genomes]
rs62252518	0.82[EUR][1000 genomes]
rs62252519	0.82[EUR][1000 genomes]
rs62253088	0.80[ASN][1000 genomes]
rs62253107	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6549030	0.82[EUR][1000 genomes]
rs66516423	0.80[ASN][1000 genomes]
rs66625173	0.83[EUR][1000 genomes]
rs67336646	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67544605	0.84[EUR][1000 genomes]
rs6762267	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6766493	0.82[EUR][1000 genomes]
rs6774985	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6776114	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6779501	0.82[EUR][1000 genomes]
rs6804845	0.86[EUR][1000 genomes]
rs726610	0.81[EUR][1000 genomes]
rs7427346	0.85[EUR][1000 genomes]
rs7609594	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7614148	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7614552	0.82[EUR][1000 genomes]
rs7618124	0.83[EUR][1000 genomes]
rs7618429	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7621381	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7636243	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638953	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7650284	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9309977	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9809258	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9814516	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9819830	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9824178	0.88[ASN][1000 genomes]
rs9861237	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9861451	0.88[ASN][1000 genomes]
rs9879025	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs993137	1.00[YRI][hapmap]
rs9990096	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008956	chr3:85394816-85460325	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv536620	chr3:85394816-85460325	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85416200-85450200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links