Variant report
Variant | rs1370620 |
---|---|
Chromosome Location | chr2:211990034-211990035 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs10170004 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs10497940 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12105986 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1370619 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1437373 | 1.00[ASN][1000 genomes] |
rs16824982 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4672605 | 0.83[ASN][1000 genomes] |
rs55634207 | 0.80[EUR][1000 genomes] |
rs55997007 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs56002634 | 0.88[ASN][1000 genomes] |
rs56153748 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs59214701 | 0.80[EUR][1000 genomes] |
rs59712773 | 0.85[ASN][1000 genomes] |
rs6723493 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6731805 | 0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs67557079 | 0.80[ASN][1000 genomes] |
rs6760475 | 0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs67776983 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs72935627 | 0.96[ASN][1000 genomes] |
rs72935675 | 0.93[ASN][1000 genomes] |
rs72935680 | 0.93[ASN][1000 genomes] |
rs72937623 | 0.80[ASN][1000 genomes] |
rs72941619 | 0.80[ASN][1000 genomes] |
rs7564709 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv875773 | chr2:211973600-212041403 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv460063 | chr2:211981894-211996803 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv584311 | chr2:211981894-211996803 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:211989000-211991600 | Enhancers | Brain Germinal Matrix | brain |
2 | chr2:211989600-211991000 | Enhancers | Fetal Brain Male | brain |