Variant report
| Variant | rs72941619 |
|---|---|
| Chromosome Location | chr2:212017130-212017131 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10170004 | 1.00[ASN][1000 genomes] |
| rs12105986 | 0.80[ASN][1000 genomes] |
| rs1370619 | 0.80[ASN][1000 genomes] |
| rs1370620 | 0.80[ASN][1000 genomes] |
| rs1437373 | 0.80[ASN][1000 genomes] |
| rs16824982 | 0.83[ASN][1000 genomes] |
| rs55634207 | 0.96[ASN][1000 genomes] |
| rs55997007 | 1.00[ASN][1000 genomes] |
| rs56153748 | 0.84[ASN][1000 genomes] |
| rs56313456 | 0.99[ASN][1000 genomes] |
| rs57148045 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59214701 | 0.96[ASN][1000 genomes] |
| rs6723493 | 0.82[ASN][1000 genomes] |
| rs6731805 | 0.83[ASN][1000 genomes] |
| rs67557079 | 1.00[ASN][1000 genomes] |
| rs6760475 | 0.83[ASN][1000 genomes] |
| rs67776983 | 0.83[ASN][1000 genomes] |
| rs72935627 | 0.81[ASN][1000 genomes] |
| rs72935675 | 0.83[ASN][1000 genomes] |
| rs72935680 | 0.84[ASN][1000 genomes] |
| rs72937616 | 0.99[ASN][1000 genomes] |
| rs72937623 | 1.00[ASN][1000 genomes] |
| rs72941630 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7564709 | 0.83[ASN][1000 genomes] |
| rs9677922 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875773 | chr2:211973600-212041403 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv875774 | chr2:212016056-212047120 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212017000-212017400 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
