Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10170004	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105986	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1370619	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1370620	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1437373	0.80[ASN][1000 genomes]
rs16824982	0.83[ASN][1000 genomes]
rs55634207	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56153748	0.84[ASN][1000 genomes]
rs56313456	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57148045	0.95[ASN][1000 genomes]
rs59214701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6723493	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6731805	0.83[ASN][1000 genomes]
rs67557079	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760475	0.83[ASN][1000 genomes]
rs67776983	0.83[ASN][1000 genomes]
rs72935627	0.81[ASN][1000 genomes]
rs72935675	0.83[ASN][1000 genomes]
rs72935680	0.84[ASN][1000 genomes]
rs72937616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72937623	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72941619	1.00[ASN][1000 genomes]
rs72941630	0.90[ASN][1000 genomes]
rs7564709	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9677922	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211998800-212009400	Weak transcription	HSMM	muscle
2	chr2:212004600-212008600	Weak transcription	HMEC	breast
3	chr2:212005400-212008600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:212008000-212009600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:212008000-212010800	Enhancers	Hela-S3	cervix
6	chr2:212008200-212008800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:212008200-212009200	Enhancers	Muscle Satellite Cultured Cells	--

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