Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10170004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16824982	0.81[ASN][1000 genomes]
rs55634207	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55997007	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56153748	0.86[ASN][1000 genomes]
rs56313456	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148045	0.93[ASN][1000 genomes]
rs59214701	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6723493	0.81[ASN][1000 genomes]
rs6731805	0.81[ASN][1000 genomes]
rs67557079	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6760475	0.81[ASN][1000 genomes]
rs67776983	0.81[ASN][1000 genomes]
rs72935627	0.80[ASN][1000 genomes]
rs72935675	0.85[ASN][1000 genomes]
rs72935680	0.86[ASN][1000 genomes]
rs72937616	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937623	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72941619	0.99[ASN][1000 genomes]
rs72941630	0.89[ASN][1000 genomes]
rs7564709	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9677922	C1QTNF5	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212008000-212010800	Enhancers	Hela-S3	cervix
2	chr2:212009800-212011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:212010000-212011800	Weak transcription	HSMM	muscle
4	chr2:212010200-212010400	Enhancers	Muscle Satellite Cultured Cells	--

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