Variant report

Variant	rs1374565
Chromosome Location	chr11:119669797-119669798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11217511	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217512	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217513	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217515	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11605165	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56116614	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56220026	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6589777	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7926229	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7935678	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7952568	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119665200-119672000	Weak transcription	Gastric	stomach
2	chr11:119665800-119669800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:119666400-119676000	Weak transcription	Right Ventricle	heart
4	chr11:119668000-119670800	Weak transcription	Fetal Heart	heart
5	chr11:119668000-119672000	Weak transcription	Spleen	Spleen
6	chr11:119668600-119670800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:119669400-119671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:119669600-119671800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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