Variant report

Variant	rs7935678
Chromosome Location	chr11:119665733-119665734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119660449..119662688-chr11:119663958..119666461,2	K562	blood:
2	chr11:119663785..119666002-chr11:119674482..119676269,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11217511	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11217512	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11217513	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11217515	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11217524	0.94[CEU][hapmap]
rs11605165	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1374565	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2084291	0.87[CEU][hapmap]
rs35525341	0.81[AFR][1000 genomes]
rs56116614	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56220026	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6589777	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7926229	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7952568	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1837528	chr11:119659918-119666352	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119661600-119666600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:119662600-119668400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:119662800-119665800	Weak transcription	Fetal Brain Male	brain
4	chr11:119662800-119667000	Weak transcription	Fetal Brain Female	brain
5	chr11:119662800-119667400	Weak transcription	Fetal Lung	lung
6	chr11:119662800-119667800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:119663400-119669000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr11:119663800-119666600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr11:119664200-119665800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:119664200-119665800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr11:119664200-119666200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr11:119664600-119666000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:119665000-119666400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr11:119665200-119666600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:119665200-119667200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:119665200-119672000	Weak transcription	Gastric	stomach
17	chr11:119665400-119665800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr11:119665400-119666200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:119665400-119666400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:119665400-119666400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:119665400-119666600	Enhancers	Esophagus	oesophagus
22	chr11:119665400-119666600	Enhancers	NHDF-Ad	bronchial
23	chr11:119665400-119668400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:119665400-119668600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:119665400-119668800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
26	chr11:119665400-119669400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr11:119665600-119665800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr11:119665600-119665800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:119665600-119666000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr11:119665600-119666200	Weak transcription	Right Ventricle	heart
31	chr11:119665600-119666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:119665600-119666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:119665600-119666400	Enhancers	Brain Angular Gyrus	brain
34	chr11:119665600-119666400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:119665600-119666600	Enhancers	H9 Cell Line	embryonic stem cell
36	chr11:119665600-119666600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:119665600-119666600	Flanking Active TSS	NH-A	brain
38	chr11:119665600-119666600	Enhancers	NHEK	skin
39	chr11:119665600-119666600	Enhancers	Osteobl	bone
40	chr11:119665600-119666800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:119665600-119668400	Enhancers	Brain Germinal Matrix	brain

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