Variant report

Variant	rs11217524
Chromosome Location	chr11:119692871-119692872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10892472	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892474	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217527	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1447149	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084291	0.94[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[ASN][1000 genomes]
rs61897703	0.84[ASN][1000 genomes]
rs61897704	0.84[ASN][1000 genomes]
rs61897705	0.84[ASN][1000 genomes]
rs7125270	1.00[ASN][1000 genomes]
rs73577182	0.84[ASN][1000 genomes]
rs7926623	0.82[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11217524	ZAK	trans	parietal	SCAN
rs11217524	APOA5	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119688000-119697600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:119688200-119693800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:119688200-119695600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:119688200-119702800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:119690800-119698000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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