Variant report

Variant	rs10892472
Chromosome Location	chr11:119683607-119683608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10892474	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217524	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217527	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1447149	1.00[ASN][1000 genomes]
rs2084291	0.94[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61897703	0.84[ASN][1000 genomes]
rs61897704	0.84[ASN][1000 genomes]
rs61897705	0.84[ASN][1000 genomes]
rs7125270	1.00[ASN][1000 genomes]
rs73577182	0.84[ASN][1000 genomes]
rs7926586	0.82[EUR][1000 genomes]
rs7926623	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10892472	APOA5	cis	cerebellum	SCAN
rs10892472	C1QTNF5	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119677800-119683800	Weak transcription	Right Ventricle	heart
2	chr11:119681600-119684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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