Variant report

Variant	rs10892474
Chromosome Location	chr11:119687133-119687134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10892472	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217524	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217527	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1447149	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2084291	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61897703	0.84[ASN][1000 genomes]
rs61897704	0.84[ASN][1000 genomes]
rs61897705	0.84[ASN][1000 genomes]
rs7125270	1.00[ASN][1000 genomes]
rs73577182	0.84[ASN][1000 genomes]
rs7926586	0.82[EUR][1000 genomes]
rs7926623	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10892474	APOA5	cis	cerebellum	SCAN
rs10892474	C1QTNF5	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119685000-119687800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:119686400-119688000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:119686400-119689800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:119686600-119689600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:119686800-119687600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:119686800-119687800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:119686800-119687800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:119686800-119688000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:119686800-119688200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:119686800-119688200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:119686800-119688400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:119686800-119688400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:119686800-119689400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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