Variant report

Variant	rs1447149
Chromosome Location	chr11:119691069-119691070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10892472	1.00[ASN][1000 genomes]
rs10892474	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217524	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217527	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2084291	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61897703	0.84[ASN][1000 genomes]
rs61897704	0.84[ASN][1000 genomes]
rs61897705	0.84[ASN][1000 genomes]
rs7125270	1.00[ASN][1000 genomes]
rs73577182	0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1447149	MPZL3	cis	cerebellum	SCAN
rs1447149	ZAK	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119688000-119697600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:119688200-119693800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:119688200-119695600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:119688200-119702800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:119690600-119691600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:119690800-119698000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:119691000-119691400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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