Variant report

Variant	rs137502
Chromosome Location	chr22:33276956-33276957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33275938..33278080-chr22:33280895..33283450,2	K562	blood:
2	22:32920308-32927723..22:33273392-33279610	K562	blood:
3	22:32292186-32294405..22:33273392-33279610	K562	blood:
4	chr22:33265719..33267942-chr22:33275448..33277147,2	K562	blood:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs137508	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137513	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137517	1.00[EUR][1000 genomes]
rs137519	1.00[EUR][1000 genomes]
rs137524	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137527	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137529	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137539	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137542	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs137544	0.83[EUR][1000 genomes]
rs137549	0.83[EUR][1000 genomes]
rs241878	0.83[EUR][1000 genomes]
rs241879	0.83[EUR][1000 genomes]
rs241880	0.83[EUR][1000 genomes]
rs241892	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4449	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs80692	0.96[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
2	chr22:33257800-33282000	Weak transcription	HepG2	liver
3	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
7	chr22:33274400-33277600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:33275000-33280200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr22:33275400-33277200	Enhancers	Fetal Thymus	thymus
10	chr22:33275400-33279600	Enhancers	Primary hematopoietic stem cells	blood
11	chr22:33275400-33279600	Enhancers	Fetal Muscle Leg	muscle
12	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr22:33275600-33277600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr22:33275800-33277000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr22:33275800-33284000	Enhancers	Fetal Stomach	stomach
16	chr22:33276000-33277600	Enhancers	Stomach Smooth Muscle	stomach
17	chr22:33276000-33277800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr22:33276000-33277800	Enhancers	Fetal Intestine Large	intestine
19	chr22:33276000-33277800	Enhancers	Fetal Intestine Small	intestine
20	chr22:33276000-33279600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr22:33276200-33277600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:33276200-33277600	Enhancers	Left Ventricle	heart
23	chr22:33276200-33277600	Enhancers	Lung	lung
24	chr22:33276200-33277600	Enhancers	Right Atrium	heart
25	chr22:33276200-33277600	Enhancers	HSMMtube	muscle
26	chr22:33276200-33278200	Enhancers	Right Ventricle	heart
27	chr22:33276200-33278400	Enhancers	Placenta	Placenta
28	chr22:33276200-33279000	Enhancers	Fetal Muscle Trunk	muscle
29	chr22:33276200-33279400	Enhancers	Fetal Lung	lung
30	chr22:33276400-33277000	Enhancers	Ovary	ovary
31	chr22:33276400-33277400	Flanking Active TSS	K562	blood
32	chr22:33276400-33277600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr22:33276400-33277600	Enhancers	Duodenum Mucosa	Duodenum
34	chr22:33276400-33277600	Enhancers	Spleen	Spleen
35	chr22:33276600-33277600	Enhancers	Brain Germinal Matrix	brain
36	chr22:33276600-33277600	Enhancers	Brain Hippocampus Middle	brain
37	chr22:33276600-33278000	Enhancers	Thymus	Thymus
38	chr22:33276800-33277000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr22:33276800-33277000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr22:33276800-33277000	Enhancers	Psoas Muscle	Psoas
41	chr22:33276800-33277000	Flanking Active TSS	HSMM	muscle
42	chr22:33276800-33277200	Enhancers	NHLF	lung
43	chr22:33276800-33277400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr22:33276800-33277400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr22:33276800-33277400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr22:33276800-33277400	Enhancers	Brain Anterior Caudate	brain
47	chr22:33276800-33277400	Enhancers	Placenta Amnion	Placenta Amnion
48	chr22:33276800-33277400	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr22:33276800-33277400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr22:33276800-33277600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links