Variant report

Variant	rs80692
Chromosome Location	chr22:33299528-33299529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs137502	0.96[EUR][1000 genomes]
rs137508	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137513	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137517	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137519	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137524	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137527	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137529	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137539	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137542	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs137544	1.00[AMR][1000 genomes]
rs137547	1.00[AMR][1000 genomes]
rs137549	1.00[AMR][1000 genomes]
rs241877	1.00[AMR][1000 genomes]
rs241878	1.00[AMR][1000 genomes]
rs241879	1.00[AMR][1000 genomes]
rs241880	1.00[AMR][1000 genomes]
rs241892	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4449	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33283600-33299600	Weak transcription	Right Atrium	heart
3	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:33293600-33301400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr22:33298000-33306800	Weak transcription	K562	blood
8	chr22:33298400-33300800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:33299400-33299800	Enhancers	Brain Cingulate Gyrus	brain
10	chr22:33299400-33300000	Enhancers	Brain Hippocampus Middle	brain
11	chr22:33299400-33300000	Enhancers	Brain Substantia Nigra	brain
12	chr22:33299400-33302400	Enhancers	Fetal Brain Male	brain
13	chr22:33299400-33302400	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links