Variant report

Variant	rs137547
Chromosome Location	chr22:33311455-33311456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs137508	1.00[AMR][1000 genomes]
rs137513	0.85[CEU][hapmap];1.00[AMR][1000 genomes]
rs137517	1.00[AMR][1000 genomes]
rs137519	1.00[AMR][1000 genomes]
rs137524	0.85[CEU][hapmap];1.00[AMR][1000 genomes]
rs137527	0.85[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs137529	0.85[CEU][hapmap];1.00[AMR][1000 genomes]
rs137539	0.82[CEU][hapmap];1.00[AMR][1000 genomes]
rs137542	1.00[AMR][1000 genomes]
rs137544	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs137549	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs241877	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs241878	1.00[AMR][1000 genomes]
rs241879	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs241880	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs241892	0.85[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs4449	0.85[CEU][hapmap];1.00[AMR][1000 genomes]
rs80692	1.00[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs137547	RFPL3	cis	brain	seeQTL
rs137547	RFPL2	cis	brain	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr22:33308000-33311600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr22:33308000-33311800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr22:33308000-33313000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr22:33308200-33313600	Weak transcription	Fetal Brain Male	brain
7	chr22:33309800-33311800	Weak transcription	Brain Anterior Caudate	brain
8	chr22:33310000-33313200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr22:33310400-33311800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr22:33311000-33311800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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