Variant report

Variant	rs1375976
Chromosome Location	chr11:26863202-26863203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12275693	0.85[CHB][hapmap]
rs1545433	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17243713	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17243748	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122453	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4307673	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60713882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111860	0.85[CHB][hapmap]
rs7112717	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886798	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897142	chr11:26786121-26903063	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv467780	chr11:26792264-26876833	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv553909	chr11:26792264-26876833	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897143	chr11:26793052-26880991	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv897144	chr11:26793052-26903063	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553910	chr11:26794368-26863615	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv897145	chr11:26794368-26876833	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv553911	chr11:26850692-26905496	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26861200-26864200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr11:26861600-26863800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:26861600-26865000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26861600-26865000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26861800-26863800	Weak transcription	NHLF	lung
6	chr11:26861800-26864200	Enhancers	Fetal Stomach	stomach
7	chr11:26861800-26870600	Weak transcription	Fetal Kidney	kidney
8	chr11:26862000-26863600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:26862000-26863800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:26862000-26865000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:26862000-26865000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:26862000-26865400	Enhancers	Stomach Smooth Muscle	stomach
13	chr11:26862200-26863600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:26862400-26863400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:26862400-26863800	Enhancers	NHDF-Ad	bronchial
16	chr11:26862400-26865000	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:26862400-26870600	Weak transcription	Psoas Muscle	Psoas
18	chr11:26862600-26864400	Enhancers	HSMM	muscle
19	chr11:26862600-26866800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:26862800-26864200	Weak transcription	Aorta	Aorta
21	chr11:26862800-26865200	Enhancers	Osteobl	bone
22	chr11:26863000-26864400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:26863200-26864200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:26863200-26864200	Enhancers	Fetal Lung	lung
25	chr11:26863200-26864400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:26863200-26864800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:26863200-26865000	Enhancers	Fetal Muscle Leg	muscle
28	chr11:26863200-26865200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:26863200-26865200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:26863200-26865800	Enhancers	Colon Smooth Muscle	Colon

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