Variant report

Variant	rs1381898
Chromosome Location	chr4:103243696-103243697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103238583..103241171-chr4:103242151..103243878,2	MCF-7	breast:
2	chr4:103242499..103244957-chr4:103246433..103250034,3	MCF-7	breast:
3	chr4:103236050..103237568-chr4:103242025..103244148,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17032516	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1841812	1.00[AMR][1000 genomes]
rs1841813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6814546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6825434	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664423	1.00[YRI][hapmap]
rs7687499	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7697050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:103218600-103245800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:103230000-103245800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:103232600-103249400	Weak transcription	Hela-S3	cervix
7	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:103239000-103256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:103240600-103244000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:103240800-103244600	Weak transcription	Placenta	Placenta
11	chr4:103241000-103244000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:103241000-103246400	Weak transcription	Fetal Lung	lung
13	chr4:103241200-103246400	Weak transcription	Fetal Kidney	kidney
14	chr4:103241200-103263600	Weak transcription	Liver	Liver
15	chr4:103241200-103263600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr4:103241800-103245000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:103242000-103245000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr4:103242000-103245000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:103242000-103245000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:103242000-103245000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:103242200-103245200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:103242400-103243800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:103242400-103244000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:103242400-103244600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr4:103242400-103245000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:103242600-103244000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr4:103242600-103244000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:103242600-103244200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr4:103242600-103263400	Weak transcription	Lung	lung
30	chr4:103242800-103243800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:103242800-103244000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:103242800-103259600	Weak transcription	K562	blood
33	chr4:103243200-103244400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:103243200-103256400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr4:103243400-103244000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:103243400-103244200	Enhancers	GM12878-XiMat	blood
37	chr4:103243400-103245200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:103243400-103257000	Weak transcription	Dnd41	blood
39	chr4:103243400-103258600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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