Variant report

Variant	rs6814546
Chromosome Location	chr4:103252667-103252668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1381898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032516	0.92[AFR][1000 genomes]
rs1841812	1.00[AMR][1000 genomes]
rs1841813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6825434	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7687499	0.92[AFR][1000 genomes]
rs7697050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:103239000-103256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:103241200-103263600	Weak transcription	Liver	Liver
7	chr4:103241200-103263600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:103242600-103263400	Weak transcription	Lung	lung
9	chr4:103242800-103259600	Weak transcription	K562	blood
10	chr4:103243200-103256400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:103243400-103257000	Weak transcription	Dnd41	blood
12	chr4:103243400-103258600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:103243800-103255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:103243800-103256800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:103244000-103262000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:103244000-103262000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:103244200-103255200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:103244600-103260200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:103245000-103257200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:103245000-103257400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:103245200-103253400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:103246000-103253400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:103249800-103260200	Weak transcription	Hela-S3	cervix
24	chr4:103250000-103260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:103251800-103255800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:103252000-103261600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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