Variant report

Variant	rs17032516
Chromosome Location	chr4:103238763-103238764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103238583..103241171-chr4:103242151..103243878,2	MCF-7	breast:
2	chr4:103234417..103236340-chr4:103237988..103239512,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1381898	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1585216	0.84[ASW][hapmap]
rs6814546	0.92[AFR][1000 genomes]
rs6825434	0.85[AFR][1000 genomes]
rs7664423	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7687499	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:103214800-103243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:103218000-103242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:103218200-103239800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:103218600-103245800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr4:103219200-103242600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:103221400-103239000	Weak transcription	Ovary	ovary
10	chr4:103221400-103242600	Weak transcription	K562	blood
11	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:103224400-103239800	Weak transcription	Colonic Mucosa	Colon
13	chr4:103225600-103240200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:103228000-103242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:103228200-103242800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:103228600-103239200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:103228600-103242600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:103229600-103239800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:103229600-103239800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:103229600-103240200	Weak transcription	Placenta	Placenta
21	chr4:103229800-103240600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:103230000-103242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:103230000-103245800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:103231200-103239600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:103231400-103240600	Weak transcription	Pancreas	Pancrea
26	chr4:103232600-103242400	Weak transcription	Dnd41	blood
27	chr4:103232600-103249400	Weak transcription	Hela-S3	cervix
28	chr4:103233800-103241000	Weak transcription	Fetal Stomach	stomach
29	chr4:103234800-103242600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:103235800-103240600	Weak transcription	Lung	lung
31	chr4:103236000-103239400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:103236000-103242800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:103236200-103242600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:103237600-103239800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:103237600-103240800	Weak transcription	Liver	Liver
37	chr4:103237800-103238800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:103237800-103239000	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr4:103238200-103241000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:103238600-103239000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr4:103238600-103240400	Strong transcription	Primary T cells from cord blood	blood

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