Variant report
Variant | rs1382213 |
---|---|
Chromosome Location | chr3:162319644-162319645 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10048975 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10513588 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10513589 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1121055 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12054159 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12330272 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1382211 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1382212 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1478168 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs1496738 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1600099 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17706403 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17707153 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs17757426 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17758116 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1845912 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1904101 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28619440 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28748005 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28814090 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28879757 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3907217 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6414403 | 0.87[AMR][1000 genomes] |
rs6441534 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs721762 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7428118 | 0.87[AMR][1000 genomes] |
rs7620379 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7635263 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7647069 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9290129 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9822252 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9822369 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9823059 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9824243 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9826812 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9828168 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9828507 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9839765 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9845518 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9850473 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9850871 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9859293 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9860466 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9867039 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9879388 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9880391 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9880875 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9883974 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs993524 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006802 | chr3:161921063-162599175 | Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv877735 | chr3:162123179-162380954 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv428424 | chr3:162145988-163033943 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1012160 | chr3:162182166-162540478 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv592201 | chr3:162188625-163142162 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
6 | nsv829775 | chr3:162211618-162406402 | Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv470994 | chr3:162217993-162945834 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
8 | nsv877755 | chr3:162218849-162386891 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv877756 | chr3:162218849-162391801 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv877757 | chr3:162226534-162391801 | Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv1005142 | chr3:162284967-162447818 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv877758 | chr3:162287573-162521339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv877759 | chr3:162303276-162521339 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | nsv592206 | chr3:162305516-162380954 | Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
15 | nsv592207 | chr3:162310379-162391801 | Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
16 | nsv877760 | chr3:162314038-162391801 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:162317800-162332400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr3:162318000-162323800 | Weak transcription | H1 Cell Line | embryonic stem cell |
3 | chr3:162319000-162320000 | Flanking Active TSS | Dnd41 | blood |
4 | chr3:162319200-162323800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |