Variant report

Variant	rs6414403
Chromosome Location	chr3:162383986-162383987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10048975	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10513588	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10513589	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1121055	0.93[AMR][1000 genomes]
rs11922500	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12054159	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12330272	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13083886	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382211	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1382212	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1382213	0.87[AMR][1000 genomes]
rs1496738	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1600099	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17707153	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17758116	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1845912	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1874510	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874512	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904101	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2029925	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28748005	0.87[AMR][1000 genomes]
rs28814090	0.93[AMR][1000 genomes]
rs28879757	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3907217	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56242739	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6414407	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441534	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441540	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441541	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441543	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441545	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6764576	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6778765	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7427964	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427978	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7428118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7433902	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620379	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7624234	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7630042	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7634217	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635263	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7646046	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647069	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7652432	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810012	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813079	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822252	0.81[AMR][1000 genomes]
rs9824243	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9826812	0.93[AMR][1000 genomes]
rs9828168	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9828507	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9831314	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832503	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845518	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9850473	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9859307	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867039	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9870314	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878965	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880391	0.87[AMR][1000 genomes]
rs9880875	0.93[AMR][1000 genomes]
rs9882410	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882755	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883974	0.81[AMR][1000 genomes]
rs993524	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012160	chr3:162182166-162540478	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv829775	chr3:162211618-162406402	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv470994	chr3:162217993-162945834	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv877755	chr3:162218849-162386891	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv877756	chr3:162218849-162391801	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv877757	chr3:162226534-162391801	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1005142	chr3:162284967-162447818	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv877758	chr3:162287573-162521339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv877759	chr3:162303276-162521339	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv592207	chr3:162310379-162391801	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv877760	chr3:162314038-162391801	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv877761	chr3:162346392-162521339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv592208	chr3:162369863-162437102	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv460957	chr3:162370941-162399269	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv592209	chr3:162370941-162399269	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv1005637	chr3:162379324-162635451	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv965128	chr3:162381250-162393381	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162383200-162384200	Enhancers	Dnd41	blood
2	chr3:162383400-162384200	Enhancers	Stomach Smooth Muscle	stomach

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