Variant report
| Variant | rs1385606 |
|---|---|
| Chromosome Location | chr8:65125714-65125715 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10957304 | 0.83[ASN][1000 genomes] |
| rs11990688 | 1.00[ASN][1000 genomes] |
| rs16930969 | 0.98[ASN][1000 genomes] |
| rs16930978 | 0.80[ASN][1000 genomes] |
| rs16930983 | 0.80[ASN][1000 genomes] |
| rs16930984 | 0.80[ASN][1000 genomes] |
| rs1899049 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1899050 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1948035 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1971832 | 0.83[ASN][1000 genomes] |
| rs4576459 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56056312 | 1.00[ASN][1000 genomes] |
| rs56821160 | 1.00[ASN][1000 genomes] |
| rs58529141 | 0.81[ASN][1000 genomes] |
| rs58934870 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60726853 | 0.83[ASN][1000 genomes] |
| rs6989735 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7003591 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7014089 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72652651 | 0.98[ASN][1000 genomes] |
| rs73244051 | 0.80[ASN][1000 genomes] |
| rs73244592 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73246203 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs936794 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1794842 | chr8:65123560-65145957 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65119000-65133600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
