Variant report
| Variant | rs56056312 |
|---|---|
| Chromosome Location | chr8:65117696-65117697 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10957304 | 0.83[ASN][1000 genomes] |
| rs11774751 | 1.00[AMR][1000 genomes] |
| rs11778132 | 0.83[EUR][1000 genomes] |
| rs11780082 | 0.83[EUR][1000 genomes] |
| rs11990688 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1385606 | 1.00[ASN][1000 genomes] |
| rs16930969 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16930978 | 0.80[ASN][1000 genomes] |
| rs16930983 | 0.80[ASN][1000 genomes] |
| rs16930984 | 0.80[ASN][1000 genomes] |
| rs1899049 | 0.98[ASN][1000 genomes] |
| rs1899050 | 0.98[ASN][1000 genomes] |
| rs1948035 | 0.98[ASN][1000 genomes] |
| rs1971832 | 0.83[ASN][1000 genomes] |
| rs55894532 | 0.83[EUR][1000 genomes] |
| rs56821160 | 1.00[ASN][1000 genomes] |
| rs58529141 | 0.81[ASN][1000 genomes] |
| rs58934870 | 1.00[ASN][1000 genomes] |
| rs60726853 | 0.83[ASN][1000 genomes] |
| rs7014089 | 1.00[ASN][1000 genomes] |
| rs72652632 | 0.83[EUR][1000 genomes] |
| rs72652633 | 0.83[EUR][1000 genomes] |
| rs72652635 | 0.83[EUR][1000 genomes] |
| rs72652636 | 0.83[EUR][1000 genomes] |
| rs72652651 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73244051 | 0.80[ASN][1000 genomes] |
| rs73244543 | 0.84[AMR][1000 genomes] |
| rs73244592 | 1.00[ASN][1000 genomes] |
| rs73246203 | 1.00[ASN][1000 genomes] |
| rs7820776 | 1.00[AMR][1000 genomes] |
| rs7824886 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7832263 | 1.00[AMR][1000 genomes] |
| rs936794 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv890970 | chr8:64975466-65125295 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv438062 | chr8:65115877-65117805 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65117000-65119400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr8:65117400-65118400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
