Variant report
Variant | rs72652651 |
---|---|
Chromosome Location | chr8:65144556-65144557 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:45282955..45284476-chr8:65144448..65146443,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10957304 | 0.84[ASN][1000 genomes] |
rs11778132 | 0.82[EUR][1000 genomes] |
rs11780082 | 0.82[EUR][1000 genomes] |
rs11780675 | 0.86[EUR][1000 genomes] |
rs11783532 | 0.86[EUR][1000 genomes] |
rs11990688 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1385606 | 0.98[ASN][1000 genomes] |
rs16930969 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs16930978 | 0.81[ASN][1000 genomes] |
rs16930983 | 0.81[ASN][1000 genomes] |
rs16930984 | 0.81[ASN][1000 genomes] |
rs1899049 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs1899050 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs1948035 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs1971832 | 0.84[ASN][1000 genomes] |
rs55894532 | 0.82[EUR][1000 genomes] |
rs55958420 | 0.86[EUR][1000 genomes] |
rs56056312 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs56821160 | 0.98[ASN][1000 genomes] |
rs58529141 | 0.82[ASN][1000 genomes] |
rs58934870 | 0.98[ASN][1000 genomes] |
rs60726853 | 0.84[ASN][1000 genomes] |
rs7014089 | 0.98[ASN][1000 genomes] |
rs72652632 | 0.82[EUR][1000 genomes] |
rs72652633 | 0.82[EUR][1000 genomes] |
rs72652635 | 0.82[EUR][1000 genomes] |
rs72652636 | 0.82[EUR][1000 genomes] |
rs72652645 | 0.86[EUR][1000 genomes] |
rs72652649 | 0.86[EUR][1000 genomes] |
rs72652653 | 0.86[EUR][1000 genomes] |
rs72652656 | 0.86[EUR][1000 genomes] |
rs72652659 | 0.86[EUR][1000 genomes] |
rs72652660 | 0.81[EUR][1000 genomes] |
rs72652665 | 0.86[EUR][1000 genomes] |
rs73244051 | 0.81[ASN][1000 genomes] |
rs73244592 | 0.98[ASN][1000 genomes] |
rs73246203 | 0.98[ASN][1000 genomes] |
rs936794 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
3 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | esv1794842 | chr8:65123560-65145957 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
5 | esv3323966 | chr8:65143923-65146771 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
6 | esv3425880 | chr8:65144248-65146571 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:65139200-65146000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |