Variant report

Variant	rs55958420
Chromosome Location	chr8:65137241-65137242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10957304	0.82[EUR][1000 genomes]
rs11776222	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11778132	0.95[EUR][1000 genomes]
rs11780082	0.95[EUR][1000 genomes]
rs11780670	0.84[EUR][1000 genomes]
rs11780675	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11782839	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11783532	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16930969	0.82[EUR][1000 genomes]
rs55894532	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72652632	0.95[EUR][1000 genomes]
rs72652633	0.95[EUR][1000 genomes]
rs72652635	0.95[EUR][1000 genomes]
rs72652636	0.95[EUR][1000 genomes]
rs72652640	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72652645	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72652648	0.91[AFR][1000 genomes]
rs72652649	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72652651	0.86[EUR][1000 genomes]
rs72652653	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72652656	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72652659	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72652660	0.95[EUR][1000 genomes]
rs72652665	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1794842	chr8:65123560-65145957	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65134800-65138400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:65137200-65137400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:65137200-65139200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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