Variant report

Variant	rs72652660
Chromosome Location	chr8:65168348-65168349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11776222	0.84[EUR][1000 genomes]
rs11776705	1.00[AMR][1000 genomes]
rs11778132	0.90[EUR][1000 genomes]
rs11780082	0.90[EUR][1000 genomes]
rs11780670	1.00[AMR][1000 genomes]
rs11780675	0.95[EUR][1000 genomes]
rs11782839	0.85[EUR][1000 genomes]
rs11783532	0.95[EUR][1000 genomes]
rs55894532	0.90[EUR][1000 genomes]
rs55935978	1.00[AMR][1000 genomes]
rs55958420	0.95[EUR][1000 genomes]
rs56200209	1.00[AMR][1000 genomes]
rs72651254	1.00[AMR][1000 genomes]
rs72651272	1.00[AMR][1000 genomes]
rs72651281	1.00[AMR][1000 genomes]
rs72651290	1.00[AMR][1000 genomes]
rs72651302	1.00[AMR][1000 genomes]
rs72652622	1.00[AMR][1000 genomes]
rs72652632	0.90[EUR][1000 genomes]
rs72652633	0.90[EUR][1000 genomes]
rs72652635	0.90[EUR][1000 genomes]
rs72652636	0.90[EUR][1000 genomes]
rs72652640	0.84[EUR][1000 genomes]
rs72652645	0.95[EUR][1000 genomes]
rs72652647	1.00[AMR][1000 genomes]
rs72652649	0.95[EUR][1000 genomes]
rs72652651	0.81[EUR][1000 genomes]
rs72652653	0.95[EUR][1000 genomes]
rs72652656	0.95[EUR][1000 genomes]
rs72652659	0.95[EUR][1000 genomes]
rs72652665	0.95[EUR][1000 genomes]
rs72652676	1.00[AMR][1000 genomes]
rs72652678	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65168000-65168400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65168000-65168400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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