Variant report

Variant	rs11780675
Chromosome Location	chr8:65152459-65152460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10957304	0.82[EUR][1000 genomes]
rs11775017	1.00[AMR][1000 genomes]
rs11776222	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11777473	1.00[AMR][1000 genomes]
rs11778132	0.95[EUR][1000 genomes]
rs11778925	1.00[AMR][1000 genomes]
rs11780082	0.95[EUR][1000 genomes]
rs11780670	0.84[EUR][1000 genomes]
rs11782839	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11783532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16930969	0.82[EUR][1000 genomes]
rs55894532	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55958420	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72651279	1.00[AMR][1000 genomes]
rs72651286	1.00[AMR][1000 genomes]
rs72652632	0.95[EUR][1000 genomes]
rs72652633	0.95[EUR][1000 genomes]
rs72652635	0.95[EUR][1000 genomes]
rs72652636	0.95[EUR][1000 genomes]
rs72652640	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72652645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652649	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652651	0.86[EUR][1000 genomes]
rs72652653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652656	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652659	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652660	0.95[EUR][1000 genomes]
rs72652665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819803	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65151800-65152600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr8:65152000-65153000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr8:65152200-65152600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr8:65152200-65152600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:65152200-65152800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr8:65152200-65152800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:65152200-65153200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr8:65152200-65153200	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr8:65152200-65153200	Active TSS	HUES64 Cell Line	embryonic stem cell

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