Variant report

Variant	rs72652648
Chromosome Location	chr8:65141697-65141698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11774751	0.82[EUR][1000 genomes]
rs11775017	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11776222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11776705	0.85[EUR][1000 genomes]
rs11777473	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11778925	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11780675	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11782839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11783532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35197494	0.90[EUR][1000 genomes]
rs55676150	0.85[EUR][1000 genomes]
rs55894532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55958420	0.91[AFR][1000 genomes]
rs56323537	0.82[EUR][1000 genomes]
rs6985222	0.85[EUR][1000 genomes]
rs6998794	0.90[EUR][1000 genomes]
rs72651279	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72651286	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72651290	0.85[EUR][1000 genomes]
rs72651293	0.85[EUR][1000 genomes]
rs72651295	0.85[EUR][1000 genomes]
rs72652603	0.85[EUR][1000 genomes]
rs72652609	0.90[EUR][1000 genomes]
rs72652610	0.90[EUR][1000 genomes]
rs72652616	0.90[EUR][1000 genomes]
rs72652618	0.90[EUR][1000 genomes]
rs72652619	0.90[EUR][1000 genomes]
rs72652620	0.90[EUR][1000 genomes]
rs72652621	0.90[EUR][1000 genomes]
rs72652622	0.85[EUR][1000 genomes]
rs72652640	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652647	0.95[EUR][1000 genomes]
rs72652649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72652665	1.00[AMR][1000 genomes]
rs73244543	0.82[EUR][1000 genomes]
rs7819723	0.85[EUR][1000 genomes]
rs7819803	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7820776	0.82[EUR][1000 genomes]
rs7820938	0.90[EUR][1000 genomes]
rs7824886	0.82[EUR][1000 genomes]
rs7832263	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1794842	chr8:65123560-65145957	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3424952	chr8:65141546-65141925	Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv2518193	chr8:65141593-65141893	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65139200-65146000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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