Variant report

Variant	rs72652619
Chromosome Location	chr8:65085358-65085359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11774751	0.91[EUR][1000 genomes]
rs11775017	0.95[EUR][1000 genomes]
rs11776705	0.95[EUR][1000 genomes]
rs11777473	0.95[EUR][1000 genomes]
rs11778132	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11778925	0.95[EUR][1000 genomes]
rs11780082	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35197494	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676150	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55894532	0.81[EUR][1000 genomes]
rs55935978	0.90[EUR][1000 genomes]
rs56200209	0.90[EUR][1000 genomes]
rs56323537	0.91[EUR][1000 genomes]
rs66664584	0.87[EUR][1000 genomes]
rs6985222	0.95[EUR][1000 genomes]
rs6998794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72651258	0.90[EUR][1000 genomes]
rs72651259	0.90[EUR][1000 genomes]
rs72651275	0.90[EUR][1000 genomes]
rs72651276	0.90[EUR][1000 genomes]
rs72651279	0.95[EUR][1000 genomes]
rs72651281	0.90[EUR][1000 genomes]
rs72651286	0.95[EUR][1000 genomes]
rs72651290	0.95[EUR][1000 genomes]
rs72651293	0.95[EUR][1000 genomes]
rs72651295	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72651302	0.90[EUR][1000 genomes]
rs72652603	0.95[EUR][1000 genomes]
rs72652609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652621	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72652622	0.95[EUR][1000 genomes]
rs72652632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72652633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72652635	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72652636	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72652647	0.95[EUR][1000 genomes]
rs72652648	0.90[EUR][1000 genomes]
rs73244543	0.91[EUR][1000 genomes]
rs7819723	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7819803	0.95[EUR][1000 genomes]
rs7820776	0.91[EUR][1000 genomes]
rs7820938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824886	0.91[EUR][1000 genomes]
rs7832263	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv890970	chr8:64975466-65125295	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65084800-65085400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:65084800-65085600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:65084800-65085600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:65084800-65086200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:65085000-65085400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:65085200-65086200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links