Variant report

Variant	rs72651258
Chromosome Location	chr8:64969287-64969288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11774751	0.81[EUR][1000 genomes]
rs11775017	0.95[EUR][1000 genomes]
rs11776705	0.95[EUR][1000 genomes]
rs11777473	0.95[EUR][1000 genomes]
rs11778925	0.95[EUR][1000 genomes]
rs1444508	0.88[ASN][1000 genomes]
rs1444510	0.97[ASN][1000 genomes]
rs16930874	0.90[ASN][1000 genomes]
rs16930878	0.84[ASN][1000 genomes]
rs35197494	0.90[EUR][1000 genomes]
rs55676150	0.95[EUR][1000 genomes]
rs55935978	1.00[EUR][1000 genomes]
rs56200209	1.00[EUR][1000 genomes]
rs56323537	0.81[EUR][1000 genomes]
rs6985222	0.95[EUR][1000 genomes]
rs6997807	1.00[ASN][1000 genomes]
rs6998794	0.90[EUR][1000 genomes]
rs72651254	0.84[EUR][1000 genomes]
rs72651259	1.00[EUR][1000 genomes]
rs72651272	0.89[EUR][1000 genomes]
rs72651275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72651276	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72651279	0.95[EUR][1000 genomes]
rs72651281	1.00[EUR][1000 genomes]
rs72651286	0.95[EUR][1000 genomes]
rs72651290	0.95[EUR][1000 genomes]
rs72651293	0.95[EUR][1000 genomes]
rs72651295	0.95[EUR][1000 genomes]
rs72651302	1.00[EUR][1000 genomes]
rs72652603	0.95[EUR][1000 genomes]
rs72652609	0.90[EUR][1000 genomes]
rs72652610	0.90[EUR][1000 genomes]
rs72652616	0.90[EUR][1000 genomes]
rs72652618	0.90[EUR][1000 genomes]
rs72652619	0.90[EUR][1000 genomes]
rs72652620	0.90[EUR][1000 genomes]
rs72652621	0.90[EUR][1000 genomes]
rs72652622	0.95[EUR][1000 genomes]
rs72652647	0.84[EUR][1000 genomes]
rs73244543	0.81[EUR][1000 genomes]
rs7819723	0.95[EUR][1000 genomes]
rs7819803	0.95[EUR][1000 genomes]
rs7820776	0.81[EUR][1000 genomes]
rs7820938	0.90[EUR][1000 genomes]
rs7824886	0.81[EUR][1000 genomes]
rs7832263	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv890969	chr8:64807144-65047353	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3441836	chr8:64969224-64969354	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64968800-64969400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:64968800-64969600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:64968800-64969600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:64969000-64969600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:64969200-64969800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links