Variant report

Variant	rs11778925
Chromosome Location	chr8:65033247-65033248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11774751	0.86[EUR][1000 genomes]
rs11775017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11776222	1.00[AMR][1000 genomes]
rs11776705	1.00[EUR][1000 genomes]
rs11777473	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11780675	1.00[AMR][1000 genomes]
rs11782839	1.00[AMR][1000 genomes]
rs11783532	1.00[AMR][1000 genomes]
rs35197494	0.95[EUR][1000 genomes]
rs55676150	1.00[EUR][1000 genomes]
rs55894532	1.00[AMR][1000 genomes]
rs55935978	0.95[EUR][1000 genomes]
rs56200209	0.95[EUR][1000 genomes]
rs56323537	0.86[EUR][1000 genomes]
rs66664584	0.82[EUR][1000 genomes]
rs6985222	1.00[EUR][1000 genomes]
rs6998794	0.95[EUR][1000 genomes]
rs72651258	0.95[EUR][1000 genomes]
rs72651259	0.95[EUR][1000 genomes]
rs72651272	0.84[EUR][1000 genomes]
rs72651275	0.95[EUR][1000 genomes]
rs72651276	0.95[EUR][1000 genomes]
rs72651279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72651281	0.95[EUR][1000 genomes]
rs72651286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72651290	1.00[EUR][1000 genomes]
rs72651293	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72651295	1.00[EUR][1000 genomes]
rs72651302	0.95[EUR][1000 genomes]
rs72652603	1.00[EUR][1000 genomes]
rs72652609	0.95[EUR][1000 genomes]
rs72652610	0.95[EUR][1000 genomes]
rs72652616	0.95[EUR][1000 genomes]
rs72652618	0.95[EUR][1000 genomes]
rs72652619	0.95[EUR][1000 genomes]
rs72652620	0.95[EUR][1000 genomes]
rs72652621	0.95[EUR][1000 genomes]
rs72652622	0.89[EUR][1000 genomes]
rs72652640	1.00[AMR][1000 genomes]
rs72652645	1.00[AMR][1000 genomes]
rs72652647	0.89[EUR][1000 genomes]
rs72652648	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72652649	1.00[AMR][1000 genomes]
rs72652653	1.00[AMR][1000 genomes]
rs72652656	1.00[AMR][1000 genomes]
rs72652659	1.00[AMR][1000 genomes]
rs72652665	1.00[AMR][1000 genomes]
rs73244543	0.86[EUR][1000 genomes]
rs7819723	1.00[EUR][1000 genomes]
rs7819803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820776	0.86[EUR][1000 genomes]
rs7820938	0.95[EUR][1000 genomes]
rs7824886	0.86[EUR][1000 genomes]
rs7832263	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv890969	chr8:64807144-65047353	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv890970	chr8:64975466-65125295	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3370663	chr8:65025447-65049140	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65028600-65038400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links