Variant report
| Variant | rs11782839 |
|---|---|
| Chromosome Location | chr8:65124938-65124939 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11775017 | 1.00[AMR][1000 genomes] |
| rs11776222 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11777473 | 1.00[AMR][1000 genomes] |
| rs11778132 | 0.95[EUR][1000 genomes] |
| rs11778925 | 1.00[AMR][1000 genomes] |
| rs11780082 | 0.95[EUR][1000 genomes] |
| rs11780675 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11783532 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55894532 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55958420 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72651279 | 1.00[AMR][1000 genomes] |
| rs72651286 | 1.00[AMR][1000 genomes] |
| rs72652632 | 0.95[EUR][1000 genomes] |
| rs72652633 | 0.95[EUR][1000 genomes] |
| rs72652635 | 0.95[EUR][1000 genomes] |
| rs72652636 | 0.95[EUR][1000 genomes] |
| rs72652640 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72652645 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72652648 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72652649 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72652653 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72652656 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72652659 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72652660 | 0.85[EUR][1000 genomes] |
| rs72652665 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7819803 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv890970 | chr8:64975466-65125295 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv1794842 | chr8:65123560-65145957 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65119000-65133600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
