Variant report
| Variant | rs1388292 |
|---|---|
| Chromosome Location | chr4:100630104-100630105 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10516454 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1352776 | 0.88[AFR][1000 genomes] |
| rs1388294 | 1.00[AFR][1000 genomes] |
| rs17029177 | 1.00[YRI][hapmap] |
| rs17029309 | 0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs17029332 | 1.00[AFR][1000 genomes] |
| rs17029334 | 1.00[AFR][1000 genomes] |
| rs17029347 | 1.00[AFR][1000 genomes] |
| rs17029353 | 1.00[AFR][1000 genomes] |
| rs2201061 | 1.00[AFR][1000 genomes] |
| rs55995913 | 1.00[AFR][1000 genomes] |
| rs56205466 | 1.00[AFR][1000 genomes] |
| rs57550482 | 0.88[AFR][1000 genomes] |
| rs59023023 | 0.88[AFR][1000 genomes] |
| rs6818086 | 0.88[AFR][1000 genomes] |
| rs6828637 | 1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs73832844 | 0.87[AFR][1000 genomes] |
| rs73832846 | 0.88[AFR][1000 genomes] |
| rs73832848 | 0.88[AFR][1000 genomes] |
| rs73832852 | 0.88[AFR][1000 genomes] |
| rs73832853 | 0.88[AFR][1000 genomes] |
| rs73832854 | 0.88[AFR][1000 genomes] |
| rs73832856 | 0.88[AFR][1000 genomes] |
| rs73832859 | 0.88[AFR][1000 genomes] |
| rs73832861 | 0.88[AFR][1000 genomes] |
| rs73832862 | 1.00[AFR][1000 genomes] |
| rs73832863 | 1.00[AFR][1000 genomes] |
| rs73832864 | 1.00[AFR][1000 genomes] |
| rs73832865 | 1.00[AFR][1000 genomes] |
| rs73832868 | 1.00[AFR][1000 genomes] |
| rs73832886 | 1.00[AFR][1000 genomes] |
| rs73832888 | 1.00[AFR][1000 genomes] |
| rs73832889 | 1.00[AFR][1000 genomes] |
| rs73832891 | 1.00[AFR][1000 genomes] |
| rs73832898 | 1.00[AFR][1000 genomes] |
| rs7670745 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933074 | chr4:100460951-100630600 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:100629800-100630600 | Enhancers | Psoas Muscle | Psoas |
| 2 | chr4:100630000-100631000 | Weak transcription | HMEC | breast |
| 3 | chr4:100630000-100631200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
