Variant report

Variant	rs57550482
Chromosome Location	chr4:100599728-100599729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100482549..100484844-chr4:100599474..100602380,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145331	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10516454	0.88[AFR][1000 genomes]
rs1352776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1388292	0.88[AFR][1000 genomes]
rs1388294	0.88[AFR][1000 genomes]
rs17029305	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029332	0.88[AFR][1000 genomes]
rs17029334	0.88[AFR][1000 genomes]
rs17029347	0.88[AFR][1000 genomes]
rs17029353	0.88[AFR][1000 genomes]
rs2201061	0.88[AFR][1000 genomes]
rs55747704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55995913	0.88[AFR][1000 genomes]
rs56205466	0.88[AFR][1000 genomes]
rs59023023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59104387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6818086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901505	1.00[AMR][1000 genomes]
rs72901515	1.00[AMR][1000 genomes]
rs72901556	1.00[AMR][1000 genomes]
rs72917485	1.00[AMR][1000 genomes]
rs72917501	1.00[AMR][1000 genomes]
rs73832844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832855	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832861	1.00[AFR][1000 genomes]
rs73832862	0.88[AFR][1000 genomes]
rs73832863	0.88[AFR][1000 genomes]
rs73832864	0.88[AFR][1000 genomes]
rs73832865	0.88[AFR][1000 genomes]
rs73832868	0.88[AFR][1000 genomes]
rs73832886	0.88[AFR][1000 genomes]
rs73832888	0.88[AFR][1000 genomes]
rs73832889	0.88[AFR][1000 genomes]
rs73832891	0.88[AFR][1000 genomes]
rs73832898	0.88[AFR][1000 genomes]
rs7670745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7678005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
2	chr4:100598600-100601400	Weak transcription	Aorta	Aorta
3	chr4:100599600-100599800	Enhancers	Left Ventricle	heart
4	chr4:100599600-100600200	Enhancers	Fetal Heart	heart
5	chr4:100599600-100600400	Enhancers	Fetal Lung	lung
6	chr4:100599600-100601600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:100599600-100601600	Enhancers	Ovary	ovary

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