Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100582949..100584886-chr4:100585826..100588092,2	MCF-7	breast:
2	chr4:100578815..100580897-chr4:100583888..100586485,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516454	0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1352776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029177	1.00[YRI][hapmap]
rs17029305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029309	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55747704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57550482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59023023	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59104387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6818086	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6828637	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs72901505	1.00[AMR][1000 genomes]
rs72901515	1.00[AMR][1000 genomes]
rs72901556	1.00[AMR][1000 genomes]
rs72917485	1.00[AMR][1000 genomes]
rs72917501	1.00[AMR][1000 genomes]
rs73832844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832846	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832852	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832855	1.00[AMR][1000 genomes]
rs73832856	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832861	0.88[AFR][1000 genomes]
rs7670745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100586000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
3	chr4:100580200-100586000	Weak transcription	Ovary	ovary
4	chr4:100580600-100586600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:100583600-100586000	Weak transcription	Fetal Heart	heart
6	chr4:100585600-100587400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:100585600-100588800	Enhancers	Fetal Lung	lung

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