Variant report

Variant	rs55747704
Chromosome Location	chr4:100587157-100587158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1352776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029309	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57550482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59023023	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59104387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6818086	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901505	1.00[AMR][1000 genomes]
rs72901515	1.00[AMR][1000 genomes]
rs72901556	1.00[AMR][1000 genomes]
rs72917485	1.00[AMR][1000 genomes]
rs72917501	1.00[AMR][1000 genomes]
rs73832844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832846	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832852	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832855	1.00[AMR][1000 genomes]
rs73832856	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832861	0.88[AFR][1000 genomes]
rs7670745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7678005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
2	chr4:100585600-100587400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:100585600-100588800	Enhancers	Fetal Lung	lung
4	chr4:100586000-100587400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:100586000-100587400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:100586000-100588000	Enhancers	Ovary	ovary
7	chr4:100586000-100588200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:100586000-100588200	Enhancers	Fetal Heart	heart
9	chr4:100586600-100587800	Enhancers	Stomach Smooth Muscle	stomach
10	chr4:100586800-100587800	Enhancers	Fetal Kidney	kidney
11	chr4:100586800-100587800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:100586800-100589400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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