Variant report
| Variant | rs72917485 |
|---|---|
| Chromosome Location | chr4:100651821-100651822 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:100483615..100485992-chr4:100651472..100653391,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138823 | Chromatin interaction |
| ENSG00000145331 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1352776 | 1.00[AMR][1000 genomes] |
| rs17029305 | 1.00[AMR][1000 genomes] |
| rs17029309 | 1.00[AMR][1000 genomes] |
| rs55747704 | 1.00[AMR][1000 genomes] |
| rs57550482 | 1.00[AMR][1000 genomes] |
| rs58004852 | 1.00[AFR][1000 genomes] |
| rs59023023 | 1.00[AMR][1000 genomes] |
| rs59104387 | 1.00[AMR][1000 genomes] |
| rs6818086 | 1.00[AMR][1000 genomes] |
| rs72901505 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72901515 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72901556 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72908793 | 1.00[AFR][1000 genomes] |
| rs72908799 | 1.00[AFR][1000 genomes] |
| rs72910604 | 0.88[AFR][1000 genomes] |
| rs72910610 | 0.93[AFR][1000 genomes] |
| rs72910622 | 1.00[AFR][1000 genomes] |
| rs72917463 | 1.00[AFR][1000 genomes] |
| rs72917501 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72919303 | 0.81[AFR][1000 genomes] |
| rs73832844 | 1.00[AMR][1000 genomes] |
| rs73832846 | 1.00[AMR][1000 genomes] |
| rs73832848 | 1.00[AMR][1000 genomes] |
| rs73832852 | 1.00[AMR][1000 genomes] |
| rs73832853 | 1.00[AMR][1000 genomes] |
| rs73832854 | 1.00[AMR][1000 genomes] |
| rs73832855 | 1.00[AMR][1000 genomes] |
| rs73832856 | 1.00[AMR][1000 genomes] |
| rs73832859 | 1.00[AMR][1000 genomes] |
| rs7670745 | 1.00[AMR][1000 genomes] |
| rs7678005 | 1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
